PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506843.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 165aa    MW: 18585.4 Da    PI: 6.9113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000182547123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  XP_016506843.1 25 YECVFCKRGFNTAQALGGHMNIH 47
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-42351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-62352No hitNo description
PfamPF139121.3E-52549IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6162552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNNSSTTHDQ EVDQPKLENG VGRSYECVFC KRGFNTAQAL GGHMNIHRKD RIRHRPISQS  60
SIINSNNKYD QIQNHVGAAA HLSFRTYFPA HSSTSTTGPV LVHDYNTGLQ DNNNNRQCLN  120
LFGDDWRVSL SLEFGAAGHV RETMEKNKGT EDHDLDLELR LGHDP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506843.11e-123PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM1D3U84e-50M1D3U8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000806941e-49(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-13C2H2 family protein